PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0013s0228.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1083aa    MW: 121133 Da    PI: 8.4126
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0013s0228.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.4e-1117100898
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +d+ + + l++p  f+e+hg+    + ++tle ++g s +v l      +++ l++G +eF + +g+++gD+v+F l+++s f  v+k+
  Sphfalx0013s0228.2.p  17 EDHRT-RFLRIPSLFMEQHGYR--IDDKVTLEGPTGFSCQVPL--LAFNNAFGLRSGFREFSDYHGIQSGDSVMFNLTRNSHF--VLKI 98 
                           33333.458**********988..6779***************..77777799************************999999..7777 PP

                           E- CS
                    B3  97 fr 98 
                           + 
  Sphfalx0013s0228.2.p  99 YG 100
                           65 PP

2B3391.5e-12368455798
                           .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++ + ++g+ ++pk+f ++       +++++ l d  gr+W v +  + ++ +  ++ GW +F++++ LkegD++v++l++ ++ + +v
  Sphfalx0013s0228.2.p 368 SKTYINTGCPIVPKRFSSKWlP---GRKTKILLVDMCGRKWPVVF--NPCGATARFQMGWFDFAQQQSLKEGDICVLELKNPNNINVFV 451
                           555666677899****988853...34568***************..****99*************************98778888888 PP

                           EEE- CS
                    B3  95 kvfr 98 
                           +++r
  Sphfalx0013s0228.2.p 452 RILR 455
                           8877 PP

3B338.91.5e-126777413399
                           -SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                    B3  33 sktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                           +++ tl d+ g      W+ +l  +++s    lt+GW+ F++++ L++gD++vF+++ + +e + +v++fr+
  Sphfalx0013s0228.2.p 677 TTEATLVDSAGnlysAIWKPRL--NRGS----LTDGWSTFASDHCLQAGDVCVFEVT-NfTELTILVHIFRR 741
                           5678899999967767788888..7777....***********************76.55**********97 PP

4B338.71.7e-12829913998
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +v+++  l++p +fa+  +  +++  + tl d+ g++W+ +   +++ +r  lt GW+ F  a++++egD++v++l++ s+  ++v++f
  Sphfalx0013s0228.2.p 829 SVSQHFVLSIPMDFAKLWM--PRKLAKSTLVDSLGQTWTATW--TGNVRRPCLT-GWRTFSIAHHIQEGDVCVLELTDPSKLIFKVHIF 912
                           67888999*******6555..345668999************..**********.********************99879998888888 PP

                           - CS
                    B3  98 r 98 
                           +
  Sphfalx0013s0228.2.p 913 S 913
                           6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-163104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-155104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-11699No hitNo description
SMARTSM010191.7E-58102IPR003340B3 DNA binding domain
PROSITE profilePS508639.5599102IPR003340B3 DNA binding domain
PfamPF023626.8E-81799IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16355452IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16356451IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857362457IPR003340B3 DNA binding domain
SMARTSM010191.7E-5363457IPR003340B3 DNA binding domain
PfamPF023625.1E-11366455IPR003340B3 DNA binding domain
CDDcd100172.91E-13367455No hitNo description
SuperFamilySSF1019363.53E-15642742IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-12646742IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.784649742IPR003340B3 DNA binding domain
SMARTSM010190.0086656742IPR003340B3 DNA binding domain
CDDcd100171.36E-11663740No hitNo description
PfamPF023622.2E-10676741IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14817913IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.982821913IPR003340B3 DNA binding domain
CDDcd100173.33E-16822913No hitNo description
SMARTSM010195.1E-5824915IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-15828918IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-10829913IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MQLPAPSFIK LILDSNEDHR TRFLRIPSLF MEQHGYRIDD KVTLEGPTGF SCQVPLLAFN  60
NAFGLRSGFR EFSDYHGIQS GDSVMFNLTR NSHFVLKIYG KQGCQKTVFP GDMKDPDKHW  120
RTFNDSPRTF SKHPCCVLRD APDSHESDPP ASSDYRKKLR KRNPVQTEIA ADPCNKLQAA  180
GRKRKVPEPE EAEEEDASCC KRRNGGFTSG FREKPSGTGR SLSNGLGQQS EDEEKLEQMQ  240
QFLEQPELFF ERLPSPPPPP VVQQENPVPG KIPAPKTYNE EGKEEEDKRE QFNMLKSAAK  300
SSAESAGNIP RQQRRHQRET LQSDLKQQFQ QQYTSEELGA EENFNRQEMV RAAKAIENRN  360
PSAIIFMSKT YINTGCPIVP KRFSSKWLPG RKTKILLVDM CGRKWPVVFN PCGATARFQM  420
GWFDFAQQQS LKEGDICVLE LKNPNNINVF VRILRLEDYV ASMKGWRQSI MEGVVSNSLP  480
TRGQGKASQE DDVMVLEQTP TRAKRPAAKL PEFDPGCTSD DSCDKNEMIR AARLTAPKKT  540
REISNSSKEE KLASPLLDSL TESTMIAGYI ASLRNTGIAE SKEKMLSVQR GGKDSSNKDS  600
DTQKTGERVP AMKPQEGMPT DSRSRRSWAQ RNYKPVEWSK ALNSTNPHDA VILADLHVLL  660
NSTIPLPASL LGMPDFTTEA TLVDSAGNLY SAIWKPRLNR GSLTDGWSTF ASDHCLQAGD  720
VCVFEVTNFT ELTILVHIFR RDDDNNRLQS AFADGESLGR ISSASTSLQS KSIDREDKPS  780
PGDQFVEDHS KVALASQRHH PISEGDKCRG ILAAYKFKVK NPSFTVCYSV SQHFVLSIPM  840
DFAKLWMPRK LAKSTLVDSL GQTWTATWTG NVRRPCLTGW RTFSIAHHIQ EGDVCVLELT  900
DPSKLIFKVH IFSVLDIDVK KHSPNASQDW HQICDASGLT TPPGCSGKSP PPNQTKLPNL  960
AKCLRGSTLL ARTSRKTAIA KALYKAAIHR KKDDARRQQS VDLATKAAIT DFVAQEQNPS  1020
TTSHTLHEDC CLPYYGKGVQ AFDEAPKPSQ PVGWNTRMHA SKLLGSKCPY NLEMPEEEEE  1080
SQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1334046029146B3 domain-containing transcription factor VRN
4i1k_B7e-1334046029146B3 domain-containing transcription factor VRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RKKLRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-14B3 family protein